Chapter 1 Importing Tree with DataChapter 2 Manipulating Tree with DataChapter 3 Exporting tree with dataChapter 4 Phylogenetic Tree VisualizationChapter 5 Phylogenetic Tree AnnotationChapter 6 Visual Exploration of Phylogenetic TreeChapter 7 Plotting tree with dataChapter 8 Annotating Tree with Silhouette Images and Sub-plotsChapter 9 ggtree for other tree-like objectsChapter 10 ggtreeExtra for presenting data on a circular layoutChapter 11 Other ggtree extensionsChapter 12 ggtree utilitiesFrequently asked questionsRelated toolsPublications of the ggtree package suiteReferences

Data Integration, Manipulation and Visualization of Phylogenetic Trees introduces and demonstrates data integration, manipulation and visualization of phylogenetic trees using a suite of R packages, tidytree, treeio, ggtree and ggtreeExtra. Using the most comprehensive packages for phylogenetic data integration and visualization, contains numerous examples that can be used for teaching and learning. Ideal for undergraduate readers and researchers with a working knowledge of R and ggplot2. Key Features: Manipulating phylogenetic tree with associated data using tidy verbs Integrating phylogenetic data from diverse sources Visualizing phylogenetic data using grammar of graphics

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